# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4

PortSystem              1.0
PortGroup               compiler_blacklist_versions 1.0
PortGroup               github 1.0

github.setup            samtools htslib 1.20
revision                0
checksums               rmd160  8a5ad7dc11a5bfd24afc0c3bc8a596075702099e \
                        sha256  e52d95b14da68e0cfd7d27faf56fef2f88c2eaf32a2be51c72e146e3aa928544 \
                        size    4779028

categories              science
maintainers             {ryandesign @ryandesign} openmaintainer
license                 MIT BSD

description             C library for accessing SAM, CRAM, VCF, BCF and other \
                        file formats used for high-throughput sequencing data

long_description        HTSlib is an implementation of a unified C library for \
                        accessing common file formats, such as SAM, CRAM, VCF \
                        and BCF, used for high-throughput sequencing data. It \
                        is the core library used by SAMtools and BCFtools.

homepage                https://www.htslib.org
github.tarball_from     releases
use_bzip2               yes

depends_lib             port:bzip2 \
                        port:curl \
                        port:libdeflate \
                        port:xz \
                        port:zlib

# cpuid_count, get_cpuid_max
compiler.blacklist-append {clang < 503}

# https://trac.macports.org/wiki/WimplicitFunctionDeclaration#strchr
configure.checks.implicit_function_declaration.whitelist-append strchr

configure.args          --enable-bz2 \
                        --with-libdeflate \
                        --enable-gcs \
                        --enable-libcurl \
                        --enable-lzma

post-destroot {
    xinstall -d ${destroot}${prefix}/share/doc/${name}
    xinstall -m 0644 -W ${worksrcpath} \
        LICENSE NEWS README \
        ${destroot}${prefix}/share/doc/${name}
}