# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4

PortSystem          1.0
PortGroup           R 1.0

R.setup             bioconductor Bioconductor ShortRead 1.62.0
revision            0
categories-append   bioconductor
maintainers         nomaintainer
license             Artistic-2
description         FASTQ input and manipulation
long_description    {*}${description}
checksums           rmd160  da8875044bccc06edae361e1845e5c96373aeac4 \
                    sha256  550ead16ef1aa2dca0f221a570ca8216b077d1627701c824cf45773145c7b174 \
                    size    5313872

depends_lib-append  port:R-Biobase \
                    port:R-BiocGenerics \
                    port:R-BiocParallel \
                    port:R-Biostrings \
                    port:R-GenomeInfoDb \
                    port:R-GenomicAlignments \
                    port:R-GenomicRanges \
                    port:R-hwriter \
                    port:R-IRanges \
                    port:R-latticeExtra \
                    port:R-pwalign \
                    port:R-Rhtslib \
                    port:R-Rsamtools \
                    port:R-S4Vectors \
                    port:R-XVector \
                    port:R-zlibbioc

depends_test-append port:R-BiocStyle \
                    port:R-biomaRt \
                    port:R-RUnit \
                    port:R-GenomicFeatures \
                    port:R-yeastNagalakshmi

# One example fails: https://github.com/Bioconductor/ShortRead/issues/13
test.run            yes