General information
- Building and installing libSBML
- Making libSBML accessible to software
- LibSBML features
- Bug reports, mailing lists, and related topics
Sarah Keating, Akiya Jouraku, Frank Bergmann, and Ben Bornstein designed and wrote most of the software, with contributions from Bill Denney, Christoph Flamm, Akira Funahashi, Michael Hucka, Ralph Gauges, Martin Ginkel, Alex Gutteridge, Stefan Hoops, Moriyoshi Koizumi, Ben Kovitz, Rainer Machné, Nicolas Rodriguez, Lucian Smith, and many others in the SBML community. Michael Hucka wrote most of this libSBML user and API documentation.
This manual describes the MATLAB application programming interface (API) of libSBML, an open-source (LGPL) library for writing and manipulating the Systems Biology Markup Language (SBML). This version of libSBML supports all releases of SBML up through Level 3 Version 1 Core Release 1. For more information about SBML, please visit http://sbml.org on the Internet. Please report bugs and other issues with libSBML using the tracker at http://sbml.org/Software/libSBML/issue-tracker.
Please note: article citations are crucial to our academic careers. If you use libSBML and you publish papers about your software, we ask that you please cite the libSBML paper:
Bornstein, B. J., Keating, S. M., Jouraku, A., and Hucka M. (2008) LibSBML: An API Library for SBML. Bioinformatics, 24(6):880-881.This and other projects of the SBML Team have been supported by the following organizations: the National Institutes of Health (USA) under grants R01 GM070923 and R01 GM077671; the International Joint Research Program of NEDO (Japan); the JST ERATO-SORST Program (Japan); the Japanese Ministry of Agriculture; the Japanese Ministry of Education, Culture, Sports, Science and Technology; the BBSRC e-Science Initiative (UK); the DARPA IPTO Bio-Computation Program (USA); the Army Research Office's Institute for Collaborative Biotechnologies (USA); the Air Force Office of Scientific Research (USA); the California Institute of Technology (USA); the University of Hertfordshire (UK); the Molecular Sciences Institute (USA); the Systems Biology Institute (Japan); and Keio University (Japan).