subread (1.6.0+dfsg-1) unstable; urgency=medium * Update d/watch to version 4 * New upstream version 1.6.0+dfsg * Update d/subread.install, add sublong and txUnique binaries * d/rules: - add man page generation for sublong binary - use conditional variable assignment operator for DEB_HOST_ARCH * d/control: - bump Standards-Version to 4.1.1 - drop autopkgtest testsuite from d/control as we have d/tests/control * Update arch_specific_flags patch, fix Makefile for sublong -- Alexandre Mestiashvili Fri, 17 Nov 2017 16:43:55 +0100 subread (1.5.3+dfsg-1) unstable; urgency=medium * Bump Standards-Version to 4.0.0 * New upstream version 1.5.3+dfsg * Refresh and update paches * Update man pages * Remove trailing whitespaces from changelog -- Alexandre Mestiashvili Fri, 28 Jul 2017 16:09:49 +0200 subread (1.5.2+dfsg-1) unstable; urgency=medium * New upstream version 1.5.2+dfsg * Refresh and update patches * Add d/patches/typo.patch fixing a typo in featureCounts -- Alexandre Mestiashvili Tue, 21 Mar 2017 16:18:52 +0100 subread (1.5.1+dfsg-4) unstable; urgency=medium * Fix watch file * debhelper 10 * remove outdated information from README.source -- Andreas Tille Fri, 02 Dec 2016 08:22:05 +0100 subread (1.5.1+dfsg-3) unstable; urgency=medium * Pass triplet-prefixed CC to make -- Alexandre Mestiashvili Mon, 05 Sep 2016 14:59:37 +0200 subread (1.5.1+dfsg-2) unstable; urgency=medium * Team upload. * Make build reproducible. - Add compiler flags to ensure use of -fdebug-prefix-map. -- Sascha Steinbiss Sun, 04 Sep 2016 15:16:33 +0000 subread (1.5.1+dfsg-1) unstable; urgency=medium * Imported Upstream version 1.5.1+dfsg * Fix copyright Format: s/http/https/ * Refresh and remove applied patches -- Alexandre Mestiashvili Sun, 28 Aug 2016 08:43:33 +0200 subread (1.5.0-p3+dfsg-3) unstable; urgency=medium * Team upload. * Further address reproducibility by forcing mode on tarball contents. -- Sascha Steinbiss Thu, 21 Jul 2016 13:23:14 +0000 subread (1.5.0-p3+dfsg-2) unstable; urgency=medium * Team upload. * Make build reproducible by ensuring umask and mtime of archive contents are deterministic. -- Sascha Steinbiss Mon, 18 Jul 2016 07:46:12 +0000 subread (1.5.0-p3+dfsg-1) unstable; urgency=medium * Drop get-orig-source target, update d/watch to repack and use compression xz * Imported Upstream version 1.5.0-p3+dfsg -- Alexandre Mestiashvili Sat, 04 Jun 2016 09:16:27 +0200 subread (1.5.0-p2+dfsg-3) unstable; urgency=medium * Fix build on armel, armhf, arm64 and ppc64el It appears that -fsigned-char option must be defined before other CFLAGS or some binaries fail to work on architectures defined above -- Alexandre Mestiashvili Tue, 26 Apr 2016 22:44:51 +0200 subread (1.5.0-p2+dfsg-2) unstable; urgency=medium * Cleanup d/rules * Add patch fixing ftbfs on kfreebsd -- Alexandre Mestiashvili Sat, 23 Apr 2016 22:19:34 +0200 subread (1.5.0-p2+dfsg-1) unstable; urgency=medium * Imported Upstream version 1.5.0-p2+dfsg * Refresh patches * Add --parallel to dh $@ * Update arch_specific_flags.patch: append CFLAGS and LDFLAGS instead of hardcoding them in the Makefile * Cme fix dpkg, update VCS fields, bump Standards-Version * Add python and bc to Build-Depends, needed for tests * Run all tests -- Alexandre Mestiashvili Fri, 22 Apr 2016 18:09:24 +0200 subread (1.5.0-p1+dfsg-2) unstable; urgency=medium * d/control: remove hurd-i386 and mipsel due to failing tests -- Alexandre Mestiashvili Mon, 18 Jan 2016 12:03:41 +0100 subread (1.5.0-p1+dfsg-1) unstable; urgency=medium * Imported Upstream version 1.5.0-p1+dfsg * d/patches: refresh and remove applied patches -- Alexandre Mestiashvili Tue, 05 Jan 2016 15:58:47 +0100 subread (1.5.0+dfsg-1) unstable; urgency=medium * Imported Upstream version 1.5.0+dfsg * no PDF documentation in this release * removed globalReassembly and subtools binaries, added "repair" tool -- Alexandre Mestiashvili Fri, 06 Nov 2015 15:05:00 +0100 subread (1.4.6-p5+dfsg-1) unstable; urgency=medium * Imported Upstream version 1.4.6-p5+dfsg * Build and install SubreadUsersGuide.pdf -- Alexandre Mestiashvili Sat, 05 Sep 2015 12:35:30 +0200 subread (1.4.6-p4+dfsg-1) unstable; urgency=medium * d/patches/arch_specific_flags.patch: set the optimization level to -03 because -O levels higher than 3 have no effect. * Imported Upstream version 1.4.6-p4+dfsg -- Alexandre Mestiashvili Mon, 06 Jul 2015 15:51:55 +0200 subread (1.4.6-p3+dfsg-2) unstable; urgency=medium * d/changelog: upload to unstable, forgot to include the amd64 architecture in d/contorl * d/control: added amd64 to Architecture -- Alexandre Mestiashvili Thu, 21 May 2015 20:56:14 +0200 subread (1.4.6-p3+dfsg-1) unstable; urgency=medium * d/changelog: upload to unstable * d/rules: enable -fsigned-char for all architectures * d/patches/arch_specific_flags.patch: use -O2 instead of -O9 * d/control: not building for powerpc, mips, s390x, see d/README.source * d/README.source: merge with d/README.Debian-source describe the reason for not building on some architectures * Imported Upstream version 1.4.6-p3+dfsg -- Alexandre Mestiashvili Tue, 19 May 2015 13:51:49 +0200 subread (1.4.6-p2+dfsg-4) experimental; urgency=medium * d/rules: add -msse3 and -mtune=generic for i386/amd64 * d/patches: merge hardening and gcc_flags_cleanup patches * d/patches: updated and renamed getopt4exactSNP.patch to getopt.patch fixed 2 more issues with wrong assignment for the getopt_long function -- Alexandre Mestiashvili Mon, 18 May 2015 17:46:15 +0200 subread (1.4.6-p2+dfsg-3) experimental; urgency=medium * d/patches/getopt4exactSNP.patch: attempt to fix #784929 -- Alexandre Mestiashvili Wed, 13 May 2015 22:22:24 +0200 subread (1.4.6-p2+dfsg-2) unstable; urgency=medium * d/patches/gcc_flags_cleanup.patch: remove -mtune=core2 and mmmx,msse* flags Closes: #784780 * d/rules: use override_dh_installexamples-indep, Closes: #784782 * d/README.Debian-source: mention doc/SubreadUserGuide.pdf removal -- Alexandre Mestiashvili Sun, 10 May 2015 10:43:19 +0200 subread (1.4.6-p2+dfsg-1) unstable; urgency=medium * Actual first upload after fixing ftpmaster issues Closes: #779014 * d/copyright: exclude pdf without source files * d/patches: add Descriptions * d/watch: use repacksuffix to add +dfsg suffix * Imported Upstream version 1.4.6-p2+dfsg -- Alexandre Mestiashvili Thu, 07 May 2015 21:13:48 +0200 subread (1.4.6-p2-1) UNRELEASED; urgency=medium * Imported Upstream version 1.4.6-p2 * fixed regexps for man pages cleanup * d/README.Debian: add note about subread user guide url * d/doc-base: remove, as no documentation supplied with the package * d/subread.docs: remove SubreadUserGuide.pdf -- Alexandre Mestiashvili Thu, 23 Apr 2015 10:22:03 +0200 subread (1.4.6-p1-1) unstable; urgency=low * Initial release. Closes: #779014 -- Alexandre Mestiashvili Fri, 20 Feb 2015 10:48:06 +0100