seqan (1.4.2+dfsg-2) unstable; urgency=medium * Team upload. * Declare Conflicts: with libseqan2-dev (API incompatible) See https://github.com/seqan/seqan/issues/1820 for upstream discussion. Addresses #838340. -- Sascha Steinbiss Fri, 23 Sep 2016 14:20:09 +0000 seqan (1.4.2+dfsg-1) unstable; urgency=medium [Andreas Tille] * New upstream version Closes: #766741 * Moved packaging to Git * Adapt watch file to fetch only seqan 1.x series * Update list of uploaders * Add compression option to watch file * Remove extras and core/apps from upstream source since these will be taken from seqan2 series (when doing so remove other unneeded stuff and binary files) * Add README.source to explain removals * Moved debian/upstream to debian/upstream/metadata * Drop documentation since developers should rather use seqan2 Closes: #816988, #809058 * Install cmake files Closes: #818088 [Gert Wollny] * d/rules: Add -DNDEBUG to CXXFLAGS, Closes: #811841 * d/rules: enable parallel build -- Andreas Tille Tue, 02 Aug 2016 15:58:06 +0200 seqan (1.4.1+dfsg-2) unstable; urgency=medium * Do proper manipulation of build options (thanks for the hint to Etienne Millon ) Closes: #759978, #752558 -- Andreas Tille Mon, 01 Sep 2014 22:54:54 +0200 seqan (1.4.1+dfsg-1) unstable; urgency=medium * Fix FTBFS on many buildds due to RAM exhaustion (thanks to Dejan Latinovic for the patch) Closes: #741288 * debian/copyright (watch+rules): Remove compressed and unused JS files from upstream source -- Andreas Tille Thu, 31 Jul 2014 21:18:43 +0200 seqan (1.4.1-3) unstable; urgency=medium * debian/rules: - Run test suite only on powerfull architectures (amd64) at build time * deacticate test for apps splazers which fails since some point in time after uploading 1.4.1-2 Closes: #733250 -- Andreas Tille Tue, 28 Jan 2014 09:09:09 +0100 seqan (1.4.1-2) unstable; urgency=low * debian/seqan-apps.links: s/mason/seqan_mason Closes: #730751 -- Andreas Tille Fri, 29 Nov 2013 11:39:01 +0100 seqan (1.4.1-1) unstable; urgency=low * New upstream version (patch became unneeded) Closes: #720995 * debian/upstream: - Moved DOI+PMID to References - Added eprint * debian/reference: Deleted in favour of data in debian/upstream * debian/watch: adapted to changes at upstream * debian/orig-tar.sh: Removed because the removed file is not part of the source any more * debian/control: - debhelper 9 - remove cdbs from / add python to Build-Depends - cme fix dpkg-control - canonical Vcs URLs * debian/copyright: - DEP5 - Add Upstream-Contact according to latest discussion - Update Source to actual download tarball * debian/rules: - cdbs -> dh - Need to rename /usr/bin/join to /usr/bin/seqan-join to avoid name clash with coreutils * debian/generate_manpages: use help2man to autogenerate manpages * debian/README.Debian: Describe what apps go to /usr/bin and why * debian/seqan-apps.links: Update apps that should go to /usr/bin according to mail from upstream -- Andreas Tille Wed, 27 Nov 2013 10:26:17 +0100 seqan (1.3.1-1) unstable; urgency=low * New upstream version * debian/watch: Adapt to new way to provide release archives * debian/orig-tar.sh: - Be less noisy - Provide fallback target dir in case .svn/deb-layout doese not exist - which is the case at least in my checkout * debian/control: - Standards-Version: 3.9.3 (no changes needed) - distinct short descriptions * debian/seqan-dev.doc-base: Provide doc-base control file * debian/rules + several debhelper files: Rely more on debhelper than manual moving around files to make debian/rules better maintaineable * debian/rules: - Do not specify single target files but rather use find to obtain files to move around - Save a copy of those files which will be removed by upstream clean target otherwise to enable building twice in a row -- Andreas Tille Mon, 23 Apr 2012 13:25:17 +0200 seqan (1.3-1) unstable; urgency=low * Team upload. * New upstream release (Closes: #640302). [ Charles Plessy ] * Collected various informations in ‘debian/upstream-metadata.yaml’. * Compress the source and binary packages with xz (debian/orig-tar.sh, debian/rules). * Removed convenience code copy of samtools (debian/orig-tar.sh). * Use Debhelper 8 (debian/compat, debian/control). * Conforms to Policy 3.9.2 (debian/control, no other changes needed). * Built using the cmake class of CDBS (debian/rules). * debian/control: - Corrected VCS URLs. - Build-Depend on libboost-dev as Cmake was looking for it. - Build-Depend on zlib1g-dev, as seqan needs to detect zlib to set SEQAN_HAS_SAMTOOLS to 1. - Changed Priority from extra to optional. - Changed seqan-apps Section from libdevel to science. * debian/patch/samtools.patch corrects path to SAMtools headers. * Machine-readable debian/copyright. [ Andreas Tille ] * debian/control - added myself to uploaders - Standards-Version: 3.9.1 (no changes needed) * debian/watch: Also catch RC candidates * debian/source/format: 3.0 (quilt) -- Charles Plessy Fri, 16 Sep 2011 12:51:39 +0900 seqan (1.2-1) unstable; urgency=low * Initial Release (Closes: #487361) -- Soeren Sonnenburg Wed, 30 Sep 2009 20:41:39 +0200