Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: RSEM
Source: http://deweylab.biostat.wisc.edu/rsem/src/
Files-Excluded: boost EBSeq/*.tar.gz

Files: *
Copyright: (c) 2009-2015 Bo Li bli25 [at] berkeley [dot] edu
License: GPL-3

Files: debian/*
Copyright: (c) 2015 Michigan State University
           (c) 2016 Michael R. Crusoe
License: GPL-3

License: GPL-3
 This program is free software: you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation, version 3 of the License.
 .
 This program is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 .
 You should have received a copy of the GNU General Public License
 along with this program.  If not, see <http://www.gnu.org/licenses/>.
 .
 On Debian systems, the full text of the GNU General Public
 License version 3 can be found in the file
 `/usr/share/common-licenses/GPL-3'.
Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Source: https://github.com/samtools/samtools/archive/1.3.1.tar.gz

Files: samtools-1.3/*
Copyright: © 2008–2016, Genome Research Ltd. (GRL)
           © 2003–2006, 2008–2011, by Heng Li <lh3lh3@live.co.uk>
           © 2009–2012 Broad Institute
           © 2010 Illumina, Inc.
           © 2012–2013 Peter Cock, The James Hutton Institute.
License: MIT
Comment: Modified version of samtools included as per upstream

Files: samtools-1.3/win32/xcurses.h
Copyright: Public Domain
License: public-domain
 This file is part of PDCurses (http://pdcurses.sourceforge.net/),
 which is in the public domain.

Files: samtools-1.3/win32/z*.h
Copyright: © 1995-2005 Jean-loup Gailly and Mark Adler
License: zlib
 This software is provided 'as-is', without any express or implied
 warranty.  In no event will the authors be held liable for any damages
 arising from the use of this software.
 .
 Permission is granted to anyone to use this software for any purpose,
 including commercial applications, and to alter it and redistribute it
 freely, subject to the following restrictions:
 .
  1. The origin of this software must not be misrepresented; you must not
     claim that you wrote the original software. If you use this software
     in a product, an acknowledgment in the product documentation would be
     appreciated but is not required.
  2. Altered source versions must be plainly marked as such, and must not be
     misrepresented as being the original software.
  3. This notice may not be removed or altered from any source distribution.
 .
  Jean-loup Gailly        Mark Adler
  jloup@gzip.org          madler@alumni.caltech.edu

License: MIT
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal
 in the Software without restriction, including without limitation the rights
 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
 copies of the Software, and to permit persons to whom the Software is
 furnished to do so, subject to the following conditions:
 .
 The above copyright notice and this permission notice shall be included in
 all copies or substantial portions of the Software.
 .
 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
 THE SOFTWARE.