libbpp-phyl (2.3.2-2) unstable; urgency=medium * Fixed covariant return type on 32bits arch. Closes: #889953 -- Julien Dutheil Fri, 09 Feb 2018 09:10:11 +0200 libbpp-phyl (2.3.2-1) unstable; urgency=medium [ Julien Dutheil ] * Standards-Version: 4.1.2 [ Andreas Tille ] * cme fix dpkg-control * debhelper 11 -- Julien Dutheil Mon, 05 Feb 2018 20:59:41 +0200 libbpp-phyl (2.3.1-10) unstable; urgency=medium [ Julien Dutheil ] * Does not override debian cxx flags anymore. [ Andreas Tille ] * Rebuild with gcc-7 Closes: #871085 * Standards-Version: 4.0.1 * Fix d-shlibs override -- Andreas Tille Wed, 23 Aug 2017 23:32:26 +0200 libbpp-phyl (2.3.1-9) unstable; urgency=medium * Further increased time out limit for unit tests. Closes: 866365 -- Julien Dutheil Mon, 17 Jul 2017 09:24:23 +0200 libbpp-phyl (2.3.1-8) unstable; urgency=medium * another try to have test_likelihood_clock pass on mips architecture. -- Julien Dutheil Sun, 16 Jul 2017 10:43:18 +0200 libbpp-phyl (2.3.1-7) unstable; urgency=medium * Some tests redesign. Should hopefully make test_mapping more stable, and have test_likelihood_clock pass on mips architecture -- Julien Dutheil Sat, 15 Jul 2017 22:48:50 +0200 libbpp-phyl (2.3.1-6) unstable; urgency=medium [ Julien Dutheil ] * remove some deprecation warnings which might lead to timeouts in tests [ Andreas Tille ] * Remove postinst, postrm and prerm -- Andreas Tille Fri, 14 Jul 2017 14:20:59 +0200 libbpp-phyl (2.3.1-5) unstable; urgency=medium * Fix build time issues for remaining architectures Closes: #865552 -- Andreas Tille Tue, 27 Jun 2017 11:16:14 +0200 libbpp-phyl (2.3.1-4) unstable; urgency=medium * Relax timeout for tests. Dealswith: #865552 * d-shlibs (>= 0.80) contains needed override -- Andreas Tille Mon, 26 Jun 2017 12:39:58 +0200 libbpp-phyl (2.3.1-3) unstable; urgency=medium * cmake files belong to /usr/lib/$(DEB_HOST_MULTIARCH) * debhelper 10 * Standards-Version: 4.0.0 (no changes needed) -- Andreas Tille Fri, 23 Jun 2017 09:10:34 +0200 libbpp-phyl (2.3.1-2) unstable; urgency=medium * Make sure cmake files will be installed also on i386 -- Andreas Tille Thu, 22 Jun 2017 08:03:24 +0200 libbpp-phyl (2.3.1-1) unstable; urgency=medium * New upstream version * d/watch: point to github -- Andreas Tille Tue, 13 Jun 2017 16:39:48 +0200 libbpp-phyl (2.2.0-1) unstable; urgency=medium * New upstream version * Moved packaging to Git * Better description * Team maintenance in Debian Med team * cme fix dpkg-control * Source package section: science * Add watch file * debhelper 9 * DEP5 * short dh rules file using d-shlibs * Library transition Closes: #791094 -- Andreas Tille Thu, 21 Apr 2016 14:16:41 +0200 libbpp-phyl (2.1.0-1) unstable; urgency=low * New RateDistribution classes * New models for protein sequences (COaLA) * Support for gaps in parsimony score * Improved and extended support for BppO * Several bugs fixed and warnings removed -- Julien Dutheil Thu, 07 Mar 2013 15:58:00 +0100 libbpp-phyl (2.0.3-1) unstable; urgency=low * Reorganized model hierarchy * New pairwise models * Several bugs fixed -- Julien Dutheil Thu, 09 Feb 2013 16:00:00 +0100 libbpp-phyl (2.0.2-1) unstable; urgency=low * RFP: Bio++ -- The Bio++ bioinformatics libraries. (Closes: #616373). * Packages are now non-native. * Exact substitution mapping with detailled counts. * Backup system for ML estimation. -- Julien Dutheil Thu, 09 Jun 2011 11:00:00 +0100 libbpp-phyl (2.0.1) unstable; urgency=low * Fixed bug #27 * Improved tree drawing algorithms. -- Julien Dutheil Mon, 28 Feb 2011 09:00:00 +0100 libbpp-phyl (2.0.0) unstable; urgency=low * Better mixed models * Extended substitution mapping framework * More bug fixed, notably in simulation procedures * Topology comparison tools (ELW) * Improved graphic classes -- Julien Dutheil Mon, 07 Feb 2011 09:00:00 +0100 libbpp-phyl (1.9.0) unstable; urgency=low * Several bugs fixed and improvements, compilation with -Weffc++ * Codon models * Improved non-homogeneous classes * Improved tree drawing classes -- Julien Dutheil Thu, 25 Mar 2010 13:47:24 +0100 libbpp-phyl (1.8.0) unstable; urgency=low * Several buf fixed and improvements. * New support for Nexus tree files. * New syntax for model description using keyvals. -- Julien Dutheil Wed, 10 Jun 2009 11:28:58 +0100 libbpp-phyl (1.7.0) unstable; urgency=low * Several bug fixed and improvements... -- Julien Dutheil Thu, 11 Dec 2008 12:21:37 +0100 libbpp-phyl (1.6.0) unstable; urgency=low * New +F protein models + bugs fixed. -- Julien Dutheil Wed, 24 Sep 2008 14:07:26 +0200 libbpp-phyl (1.5.1) unstable; urgency=low * Initial Release. -- Julien Dutheil Mon, 21 Jul 2008 15:17:26 +0200