libbio-samtools-perl (1.43-1) unstable; urgency=medium
[ Charles Plessy ]
dd47de5 Imported Upstream version 1.43
[ gregor herrmann ]
* Rename autopkgtest configuration file(s) as per new pkg-perl-
autopkgtest schema.
* New upstream release.
* Update years of upstream copyright and licensing terms.
[ Salvatore Bonaccorso ]
* debian/control: Use HTTPS transport protocol for Vcs-Git URI
-- Charles Plessy <plessy@debian.org> Sun, 21 Feb 2016 13:52:00 +0900
libbio-samtools-perl (1.41-1) unstable; urgency=medium
0b7140a Imported Upstream version 1.41
-- Charles Plessy <plessy@debian.org> Thu, 18 Jun 2015 08:01:22 +0900
libbio-samtools-perl (1.39-2) unstable; urgency=medium
* Team upload.
[ gregor herrmann ]
* Rename debian/upstream to debian/upstream/metadata.
* Strip trailing slash from metacpan URLs.
[ Salvatore Bonaccorso ]
* Update Vcs-Browser URL to cgit web frontend
[ gregor herrmann ]
* Add build dependency on libmodule-build-perl.
(Closes: #787670)
* Declare compliance with Debian Policy 3.9.6.
* Bump required debhelper version to 9.20120312~.
* Mark package as autopkgtest-able.
-- gregor herrmann <gregoa@debian.org> Thu, 04 Jun 2015 11:42:42 +0200
libbio-samtools-perl (1.39-1) unstable; urgency=low
cff6561 Imported Upstream version 1.39
-- Charles Plessy <plessy@debian.org> Sun, 29 Sep 2013 08:37:36 +0900
libbio-samtools-perl (1.38-1) unstable; urgency=low
715e2d1 Imported Upstream version 1.38
[ Salvatore Bonaccorso ]
6c4f50e Change search.cpan.org based URIs to metacpan.org based URIs
[ Charles Plessy ]
9cf0347 Use Debhelper 9.
c747b89 Moved README.Debian to README.test as it is all about tests.
-- Charles Plessy <plessy@debian.org> Fri, 17 May 2013 12:38:01 +0900
libbio-samtools-perl (1.37-1) unstable; urgency=low
183cfbc Imported Upstream version 1.37
[ Nathan Handler ]
d734fbe Email change: Nathan Handler -> nhandler@debian.org
[ Charles Plessy ]
c6aaf4a Conforms with Policy version 3.9.4.
7dd10a2 Normalised VCS URLs according to lintian.
-- Charles Plessy <plessy@debian.org> Sun, 06 Jan 2013 09:04:28 +0900
libbio-samtools-perl (1.36-1) unstable; urgency=low
[ Charles Plessy ]
* [abf3eaa] Imported Upstream version 1.36
* [d30ef61] Normalised Debian copyright file with 'cme fix dpkg-copyright'.
* [6f6c6f3] Summarised License of the whole package in the copyright file.
* [d5182f1] Conforms to Debian Policy version 3.9.3.
[ gregor herrmann ]
* [c3db6d4] Update {versioned,alternative} (build) dependencies.
-- Charles Plessy <plessy@debian.org> Sun, 09 Sep 2012 10:02:55 +0900
libbio-samtools-perl (1.33-1) unstable; urgency=low
* [5fd8406] New upstream release 1.33
[ Nathan Handler ]
* [4058f51] Add myself to Uploaders and debian/copyright
* [01985a1] Remove version from perl Build-Depend. oldstable has 5.10
* [5b63fda] Don't Build-Depend on libmodule-build-perl (included in
core since 5.10)
* [af3530d] Remove version from libbio-perl-perl Build-Depend. Nothing
older in archive
* [d6d6dca] Don't Depend on perl, ${perl:Depends} will pull it in
* [64ad8db] Turn short description into noun phrase based on abstract
in upstream META.json
[ Charles Plessy ]
* [bb4b659] Renamed debian/upstream-metadata.yaml to debian/upstream.
-- Charles Plessy <plessy@debian.org> Sun, 29 Jan 2012 14:38:27 +0900
libbio-samtools-perl (1.32-1) unstable; urgency=low
[36ac64b] New upstream release.
[dfb9312] Depend on BioPerl 1.6.901, following Upstream.
-- Charles Plessy <plessy@debian.org> Wed, 23 Nov 2011 16:26:32 +0900
libbio-samtools-perl (1.31-1) unstable; urgency=low
[abb8487] New upstream release 1.31
[e222e9f] New upstream release 1.30
[5d83169] Normalised debian/copyright by loading and saving it with
config-edit.
[de38fdb] Include 7 digits of the commit id in the changelog enty.
-- Charles Plessy <plessy@debian.org> Tue, 01 Nov 2011 19:22:49 +0900
libbio-samtools-perl (1.29-1) unstable; urgency=low
[ Charles Plessy ]
* (Build)-Depend on libbio-perl-perl instead of bioperl (debian/control).
[ Maximilian Gass ]
* New upstream release
* Switch to source format 3.0 (quilt)
* Format Depends in debian/control
* Remove debian/libbio-samtools-perl.docs to fix duplicate changelog
* Update debian/copyright
* Add copyright assignment to Charles Plessy for debian/*
* Replace inline Artistic-2.0 with properly wrapped version from
upstream's LICENSE file
* Merge Comment into body of GPL-1+
* Remove unused Artistic License section
-- Charles Plessy <plessy@debian.org> Tue, 28 Jun 2011 13:26:10 +0900
libbio-samtools-perl (1.28-2) unstable; urgency=low
* libbam-dev’s bam.h file moved to ‘/usr/include/samtools’.
- Build-depend on libbam-dev >= 0.1.16-1~ (debian/control).
- Override dh_auto_configure to indicate path (debian/rules).
- Use Debhelper 8 (debian/control, debian/compat).
* Incremented Standards-Version to reflect conformance with Policy 3.9.2
(debian/control, no changes needed).
* Validated debian/copyright with ‘config-edit -application dpkg-copyright’.
-- Charles Plessy <plessy@debian.org> Fri, 20 May 2011 15:02:02 +0900
libbio-samtools-perl (1.28-1) unstable; urgency=low
* New upstream release.
-- Charles Plessy <plessy@debian.org> Mon, 04 Apr 2011 20:45:31 +0900
libbio-samtools-perl (1.27-1) unstable; urgency=low
* Requires libbam 0.1.9 or superior (debian/control).
* Conformance with Policy 3.9.1:
- Point to GPL-1 instead of GPL in debian/copyright.
- Incremented Standards-Version in debian/control.
* Reformatted to debian/copyright DEP-5 format.
-- Charles Plessy <plessy@debian.org> Tue, 08 Mar 2011 20:09:10 +0900
libbio-samtools-perl (1.20-1) unstable; urgency=low
* New upstream release.
* Incremented Standards-Version to reflect conformance with Policy 3.9.0
(debian/control, no changes needed).
-- Charles Plessy <plessy@debian.org> Sat, 17 Jul 2010 10:44:34 +0900
libbio-samtools-perl (1.19-1) unstable; urgency=low
* New upstream release.
-- Charles Plessy <plessy@debian.org> Mon, 24 May 2010 16:25:08 +0900
libbio-samtools-perl (1.14-1) unstable; urgency=low
* New upstream release with a new script, bamToGBrowse.pl.
* Depend and Build-Depend on bioperl >= 1.6 (debian/control).
* t/data/ex1.bam.bai and t/data/ex1.fa.fai are now part of the
upstream source, so we do not delete them any more in the
clean target of debian/rules.
-- Charles Plessy <plessy@debian.org> Tue, 06 Apr 2010 13:41:17 +0900
libbio-samtools-perl (1.12-1) unstable; urgency=low
* New upstream release.
-- Charles Plessy <plessy@debian.org> Fri, 19 Mar 2010 22:46:54 +0900
libbio-samtools-perl (1.11-1) unstable; urgency=low
* New upstream release.
-- Charles Plessy <plessy@debian.org> Sat, 06 Mar 2010 20:29:02 +0900
libbio-samtools-perl (1.10-1) unstable; urgency=low
* New Upstream version.
* Incremented Standards-Version to reflect conformance with Policy 3.8.4
(debian/control, no changes needed).
-- Charles Plessy <plessy@debian.org> Thu, 11 Feb 2010 23:21:58 +0900
libbio-samtools-perl (1.09-1) unstable; urgency=low
* New Upstream Versions adding support for remote access to BAM
databases on http/ftp servers.
-- Charles Plessy <plessy@debian.org> Fri, 11 Dec 2009 22:53:34 +0900
libbio-samtools-perl (1.07-1) unstable; urgency=low
* New upstream release.
- IMPORTANT API CHANGE 1: The feature strand now returns +1 or -1 to
indicate whether the query was reverse complemented in the SAM file.
- IMPORTANT API CHANGE 2: The $feature->query object's dna() and seq()
methods now return the sequence as it was read, rather than the reverse
complemented version as represented in the SAM file. $feature->qseq()
returns the reverse complemented version as before.
* Removed mention that libbio-samtools-perl is built against a static
library since it was agree with the release team that the package
can enter in Testing.
-- Charles Plessy <plessy@debian.org> Mon, 23 Nov 2009 17:20:21 +0900
libbio-samtools-perl (1.06-1) unstable; urgency=low
* New Upstream Version (Bio::DB::Sam modified to work with GBrowse 1).
* Added a few informations about upstream in debian/upstream-metadata.yaml.
* Documented how I test the package in README.Debian.
-- Charles Plessy <plessy@debian.org> Sun, 08 Nov 2009 11:43:43 +0900
libbio-samtools-perl (1.05-1) unstable; urgency=low
* New upstream release.
- Bio::DB::Sam->seq_id() method no longer lower-cases reference names.
- Quashed enormous memory leak in the pileup() function.
-- Charles Plessy <plessy@debian.org> Mon, 28 Sep 2009 12:58:26 +0900
libbio-samtools-perl (1.04-1) unstable; urgency=low
* Initial Release (Closes: #543487).
-- Charles Plessy <plessy@debian.org> Tue, 15 Sep 2009 18:55:53 +0900