clustalw (2.1+lgpl-5) unstable; urgency=medium
[ Canberk Koç ]
* Team upload
* autopkgtest added
[ Andreas Tille ]
* cme fix dpkg-control
* fix spelling
* hardening=+all
-- Canberk Koç <canberkkoc@gmail.com> Fri, 22 Jul 2016 04:04:40 +0300
clustalw (2.1+lgpl-4) unstable; urgency=medium
* use dh_autotools-dev to update config.{sub,guess} (Thanks for the patch
to Adam Conrad <adconrad@debian.org>)
Closes: #729789
* Standards-Version: 3.9.5 (no changes needed)
-- Andreas Tille <tille@debian.org> Fri, 13 Dec 2013 09:18:40 +0100
clustalw (2.1+lgpl-3) unstable; urgency=low
* debian/upstream: very small fix to prevent bibcheck warning
* debian/control:
- cme fix dpkg-control
- update direct link to homepage
- debhelper 9
- canonical Vcs URLs
- remove cdbs from Build-Depends
* debian/rules: use dh
* debian/copyright: DEP5
-- Andreas Tille <tille@debian.org> Thu, 14 Nov 2013 09:07:02 +0100
clustalw (2.1+lgpl-2) unstable; urgency=low
* Removed obsolete comment in debian/copyright.
-- Charles Plessy <plessy@debian.org> Mon, 07 Feb 2011 12:08:53 +0900
clustalw (2.1+lgpl-1) unstable; urgency=low
* New upstream archive, that makes clear the relicensing to LGPL-3+.
- Mangled debian version name in debian/watch.
- Explained why ‘+lgpl’ in debian/README.Debian.
- Removed XS-Autobuild field from debian/control.
- Changed archive area in debian/control.
- Updated license in debian/copyright and debian/clustalw.1*
- Removed obsoleted lintian override (debian/clustalw.lintian-overrides).
- Removed Commercial field in debian/upstream-metadata.yaml.
* Removed un-needed documentation (debian/clustalw.docs).
* Source package hosted in a Git repository (debian/control).
* Use debhelper 8 (debian/control, debian/compat).
-- Charles Plessy <plessy@debian.org> Sat, 29 Jan 2011 19:59:40 +0900
clustalw (2.1-1) unstable; urgency=low
* New upstream version
* Added myself to uploaders
* Standards-Version: 3.9.1 (no changes needed)
* debian/rules: added get-upstream-changelog target and used
it to obtain upstream changelog in debian/CHANGELOG.upstream
* debian/source/format: 3.0 (quilt)
-- Andreas Tille <tille@debian.org> Wed, 24 Nov 2010 14:07:24 +0100
clustalw (2.0.12-1) unstable; urgency=low
* New upstream release fixing many bugs
(see /usr/share/doc/clustalw/CHANGELOG).
* Updated debian/watch to latest upstream names (Closes: #550895).
* debian/control:
- Added ${misc:Depends} substitition variable.
- Incremented Standards-Version to reflect conformance with
Policy 3.8.3 (no changes needed).
- Removed the citation information from the package long description.
* Manpages debian/clustalw.1* refreshed.
* Updated debian/copyright to the latest experimentation on the format.
* Added various Upstream informations in debian/upstream-metadata.yaml.
* Moved the upstream changelog and the test data to the debian directory.
(debian/rules, debian/clustalw.examples).
-- Charles Plessy <plessy@debian.org> Wed, 14 Oct 2009 13:47:28 +0900
clustalw (2.0.10-1) unstable; urgency=low
* New upstream release:
- New -quiet and -stats=<file> command line flags.
- command separator can now be mixed "/" and "-" on all platforms.
* debian/clustalw.1*:
- added new option and incremented version number.
- using Docbook 4.5.
* Added bibliographic information in BibTeX format in debian/reference.
* Using Debhelper 7 (debian/control, debian/compat).
* Enhances: bioperl-run (it has a wrapper for clustalw).
* debian/overrides/clustalw renamed debian/clustalw.lintian-overrides,
and is not anymore installed by dh_install (dh_lintian, called by
CDBS, takes care of it).
-- Charles Plessy <plessy@debian.org> Sun, 07 Dec 2008 19:37:06 +0900
clustalw (2.0.9-1) unstable; urgency=low
* New upstream release.
* debian/patches/to_build_with_g++-4.3.patch was accepted upstream
and therefore removed here.
* debian/copyright: added a disclaimer clarifying that this package is not
part of the Debian operating system (requirement of Policy 3.8.0).
* debian/control:
- Updated Standards-Version to 3.8.0.
- Enhances: emboss (EMBOSS has a wrapper for clustalw, `emma'.)
* debian/clustaw.1*: incremented version number.
-- Charles Plessy <plessy@debian.org> Tue, 24 Jun 2008 13:28:22 +0900
clustalw (2.0.8-1) unstable; urgency=low
* New upstream release.
- Implemented maxseqlen cmdline switch.
- Updated help-file.
- Fixed various bugs and possible memory leaks
(see /usr/share/doc/clustalw/CHANGELOG)
* debian/clustalw.1*:
- Added new option;
- incremented version number.
* debian/copyright lifted to the latest draft format version.
* debian/patches/to_build_with_g++-4.3.patch.
(Submitted and accepted upstream for 2.0.9).
-- Charles Plessy <plessy@debian.org> Wed, 04 Jun 2008 18:04:17 +0900
clustalw (2.0.7-1) unstable; urgency=low
* New upstream release.
- Fixes bug 121: CRLF in sequence names (Pearson) are not trimmed.
- Fixes bug 122: convert option broken.
- Fixes reopened bug 114: profile alignment input didn't work with new
getSeqRange routines.
- Fixes bug 119: build with g++ 4.3.
* Removed debian/patches/bug_119_gpp4.3-autoptr.patch, obsoleted by the
above correction.
* Incremented version number in debian/clustalw.1*
* Uptated debian/copyright to the latest draft of the format.
-- Charles Plessy <plessy@debian.org> Wed, 14 May 2008 09:07:26 +0900
clustalw (2.0.6-1) unstable; urgency=low
[Charles Plessy]
* New upstream release:
- Bugs fixed (fasta input performance, segfault with secondary structure
mask)
- Allows mixed-case command line options.
- Removed unncessary id console output in EMBLFileParser.cpp
* Updated my email address (debian/control, debian/copyright,
debian/clustaw.1*).
* debian/patches/bug_119_gpp4.3-autoptr.patch: upstream patch to build
clustalw with g++-4.3.
[Morten Kjeldgaard]
* debian/clustalw.1*: restored the introduction from Stéphane
Bortzmeyer original manpage.
* debian/copyright: updated information about the manpage.
-- Charles Plessy <plessy@debian.org> Fri, 02 May 2008 10:38:25 +0900
clustalw (2.0.5-1) unstable; urgency=low
* New upstream release (fixes problems with gaps).
* debian/copyright:
Added a X-Non-Free-Autobuild field to fullfill requirements from
http://lists.debian.org/msgid-search/20061129152824.GT2560@mails.so.argh.org
* Updated CHANGELOG from http://www.clustal.org/download/current/CHANGELOG
* debian/clustalw.1.xml, rewritten from scratch.
* debian/clustalw.q: updated from the DocBook sources (Closes: #463591).
-- Charles Plessy <charles-debian-nospam@plessy.org> Thu, 20 Mar 2008 15:42:38 +0900
clustalw (2.0.4-1) unstable; urgency=low
[ Steffen Moeller ]
* New upstream release
- Includes new code for UPGMA guide trees. (v. 2.0.0)
- Includes iterative alignment facility. (v. 2.0.0)
- fixed bug where Pseudo -FASTA format files were not being processed
as previously in v1.83 (v. 2.0.3)
- fixed other bugs to behave more like 1.83, and introduced a new
'-fullhelp' option. (v 2.0.4)
* updated debian/watch
* moved clustalw.1 into debian folder (easier to work
with svn-buildpackage)
* removed README and LICENSE from svn since these are
now distributed with the upstream sources
[ Charles Plessy ]
* debian/copyright made machine-readable.
* Clustal X is now built in a separate source package.
(Closes: #469442, #469443)
* Switched to CDBS.
* Added lintian override for the presence of /usr/share/doc/clustalw/LICENSE.
* debian/control:
- Allowed upload by Debian maintainers.
- Checked conformance with Policy 3.7.3 (no changes needed).
[ David Paleino ]
* debian/control:
- fixed Debian capitalisation (see bug #456582)
-- Charles Plessy <charles-debian-nospam@plessy.org> Sun, 09 Mar 2008 22:28:10 +0900
clustalw (1.83-3) unstable; urgency=low
[ Nelson A. de Oliveira ]
* Added watch file, debian/rules get-orig-source
should be used to download the orig.tar.gz, not uscan.
[ Charles Plessy ]
* Build-depend on libncbi6-dev instead of ncbi-tools6-dev.
[ Steffen Moeller ]
* Added dependency to later version lesstif2 (Closes:#429480).
* The recompilation against libvibrant6 was probably
already fixed in an earlier version, certainly it is now
(Closes:#378483).
-- Charles Plessy <charles-debian-nospam@plessy.org> Wed, 12 Sep 2007 16:50:37 +0900
clustalw (1.83-2) unstable; urgency=low
[ Steffen Moeller ]
* Help now works in ClustalX (Closes:#215414).
* debian/control:
- removed [biology] tag and improved debtags
- better formatting/wording
- suggesting alignment pretty-printers
[ Charles Plessy ]
* Add Subversion repository URL to debian/control.
* FreeDesktop menu added (Closes: #380715)
* Acknowledge NMU, thanks to Kai and Fabio. (Closes: #374241, #359712)
* Collaborative maintainance: the maintainer is a mailing list, Steffen
Moëller and Charles Plessy are uploaders.
* Upgraded to debhelper 5.
* Modified the copyright file to mention that it is not disallowed to use
autobuilders to create binary packages.
* Debian Menu transition: Apps/Science becomes Applications/Science/Biology.
* Fixed a typo in clustalw.menu (Closes: #428518)
* Updated Steffen's email adress.
* Using quilt to manage the changes to the sources.
-- Charles Plessy <charles-debian-nospam@plessy.org> Sun, 12 Aug 2007 23:06:39 +0900
clustalw (1.83-1.2) unstable; urgency=high
* Non-maintainer upload.
* No changes, let's try to trigger again the builders.
-- Fabio Tranchitella <kobold@debian.org> Fri, 10 Nov 2006 09:16:45 +0100
clustalw (1.83-1.1) unstable; urgency=low
* Non-maintainer upload.
* lesstif1 is deprecated, transition to lesstif2 (Closes: #374241)
* Dead link in the package description (Closes: #359712)
* Updated standards version, binary-indep rule required
-- Kai Hendry <hendry@iki.fi> Mon, 10 Jul 2006 11:04:05 +0900
clustalw (1.83-1) unstable; urgency=low
* New upstream version
* New maintainer
* Reapplied patches from 1.82-3
* Removed calls to insecure gets
* Cosmetics to makefile
* Extension of description
* Standards-Version: 3.5.10
* Increased version of debhelper: Build-Depends: debhelper (>= 4)
* Used debian/compat for debhelper version
* Replaces *.files by *.install, *.docs, *.manpages and used the
apropriate tools in debian/rules
* Moved clustalx to /usr/bin because it does not *belong* to the
X11 system
* Moved the manpage clustalx.1x to clustalx.1 accordingly.
* Removed debian/dirs
* Added menu entries
-- Steffen Moeller <moeller@pzr.uni-rostock.de> Mon, 23 Jun 2003 19:26:29 +0100
clustalw (1.82-3) unstable; urgency=low
* "My-wifes-Katrin-Birthday"-release (even if I doubt that she is very
interested in Debian packaging details)
* Fix a buffer override
closes: #135255
-- Andreas Tille <tille@debian.org> Wed, 27 Feb 2002 07:26:29 +0100
clustalw (1.82-2) unstable; urgency=low
* also compile GUI clustalx which is included in the sources now
-- Andreas Tille <tille@debian.org> Sat, 3 Nov 2001 14:41:50 +0100
clustalw (1.82-1) unstable; urgency=low
* New maintainer
closes: #100213
* New upstream version
closes: #40904
* Standards-Version: 3.5.6
* Moved help file to /usr/share/clustalw/clustalw_help because it
is architecture independend
* Added URL to the package description because I consider this as
"good style" to have an upstream link without installing the package
* Fixed a typo in the examples Makefile which was shiped with the
Debian package:
clustalw -profile -profile1=nuc.aln -profile2=nuc2.aln -outfile=profile.aln
^ this 2 was missing
-- Andreas Tille <tille@debian.org> Mon, 29 Oct 2001 21:40:20 +0100
clustalw (1.7-9) unstable; urgency=low
* Maintainer set to Debian QA Group <packages@qa.debian.org>.
-- Adrian Bunk <bunk@fs.tum.de> Fri, 24 Aug 2001 21:09:56 +0200
clustalw (1.7-8) unstable; urgency=low
* Adopted by new maintainer; closes: #92790
* Updated to latest standards version and added Build-Depends (changed
makefile, control, dirs, docs, and rules); closes: #91132, #91411
* Deleted empty README.Debian file.
* Corrected doc path in manpage.
* Moved package to section non-free/science, because it is a tool that
is exclusively useful for molecular biologists.
-- Dr. Guenter Bechly <gbechly@debian.org> Fri, 20 Apr 2001 19:08:00 +0200
clustalw (1.7-7) unstable; urgency=low
* Better extended description. Closes #31475.
* Manual page. Closes #31382.
-- Stephane Bortzmeyer <bortzmeyer@debian.org> Wed, 31 Mar 1999 10:50:02 +0200
clustalw (1.7-6) unstable; urgency=low
* Yet another attempt to get past rejection :-) Licence is now included
in the copyright file.
-- Stephane Bortzmeyer <bortzmeyer@debian.org> Sat, 19 Dec 1998 15:29:40 +0100
clustalw (1.7-5) unstable; urgency=low
* A LICENCE is now included, non-free unfortunately.
-- Stephane Bortzmeyer <bortzmeyer@debian.org> Thu, 17 Dec 1998 14:48:43 +0100
clustalw (1.7-4) unstable; urgency=low
* Compiles with -mieee on the Alpha: otherwise, floating exception since
ClustalW divides by zero (yuck!)
-- Stephane Bortzmeyer <bortzmeyer@debian.org> Wed, 2 Dec 1998 16:16:02 +0100
clustalw (1.7-3) unstable; urgency=low
* Tests and samples added
* On line help file added
-- Stephane Bortzmeyer <bortzmeyer@debian.org> Tue, 1 Dec 1998 15:57:50 +0100
clustalw (1.7-2) unstable; urgency=low
* Switch to dh_make
* First public release
-- Stephane Bortzmeyer <bortzmeyer@debian.org> Tue, 1 Dec 1998 15:25:13 +0100
clustalw (1.7-1) unstable; urgency=low
* Initial Release.
-- Stephane Bortzmeyer <bortzmeyer@pasteur.fr> Fri, 28 Aug 1998 16:09:48 +0200